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Bayesian Approach in Clinical Trials

Aug 04, 202544 minEp. 23
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Episode description

This episode of "In the Interim…" features Dr. Scott Berry, Dr. Kert Viele, and Dr. Melanie Quintana of Berry Consultants dissecting the technical and operational landscape of Bayesian statistics in clinical trial design. The episode discussed what is Bayesian statistics, the impact of informative and non-informative priors, and clarifies when and why Bayesian approaches surpass frequentist analyses—especially in adaptive, platform, and rare disease trial settings. The discussion directly challenges the misconception that Bayesian methods “lower the bar," presenting evidence that they often require broader data synthesis and can raise evidentiary standards.

Key regulatory developments at FDA and EMA are reviewed, with attention to updated guidance and increased adoption. Case studies illustrate Bayesian methods in practice, including the prospectively combined phase 2 and 3 analysis for REBYOTA approval; hierarchical modeling in GNE myopathy; shared controls and endpoint integration in the HEALEY ALS Platform Trial; and robust subgroup borrowing in the ROAR basket trial. The team also addresses technical challenges such as multiplicity, subgroup analysis, complexity in endpoint modeling, and appropriate strategies for blending Bayesian and frequentist approaches for maximum regulatory and scientific clarity.

Key Highlights

  • Clear explanation and real-world examples of Bayesian analysis in clinical trials.
  • Theoretical and practical distinctions from frequentist methods
  • Practical breakdown of control sharing, endpoint integration, and subgroup borrowing.
  • Regulatory position and the increasing acceptance of Bayesian trial designs and analyses.
  • Case examples: REBYOTA, GNE myopathy, HEALY ALS Platform Trial, ROAR basket trial.

Transcript

Judith

Welcome to Berry's In the Interim podcast, where we explore the cutting edge of innovative clinical trial design for the pharmaceutical and medical industries, and so much more. Let's dive in.

Scott Berry

All right. Welcome everybody back to, in the Interim, where we live, uh, in the interim analysis of clinical trials, the interim analysis of science. And I'm joined today by, uh, uh, what has become now your fourth or fifth, time. On in the interim, Kurt Veley has joined me and Melanie Cantana. leads our consulting group here at Berry Consultants, and I'm gonna lose control of this podcast today. And I'm gonna hand it over to the be the host to Kurt.

And Kurt, you want to be the host and introduce the topic for today.

Kert Viele

Yeah. So, um, anyway, I like being in charge. I like interrogating Scott. Um. The, uh, so the topic today is something that we probably should have talked about a while back given, uh, what we, uh, do day to day, which is Bayesian statistics and how it's relevant to clinical trials. Uh, we want to talk about what it is, we want to talk about what it, when it's useful. Uh, we want to talk about, uh, standards of evidence and how it interacts with adaptive trials. We're gonna hit a lot of stuff.

So let me start with the absolute hardest question on the list. And for Scott, can you define Bayesian statistics?

Scott Berry

Wow, wow. Maybe I shouldn't have let you be the host,

Kert Viele

I know.

Scott Berry

if you're gonna do this, if you're gonna do this to me. So I. Uh, we can do this mathematically, and I don't think people are interested in mathematically where we a prior in our parameters of interest. We do create a model like frequent to statistics, but we have a model for the data. Given those various parameters and conditional on the data, we update our uncertainty about the unknown parameters in our model. The beauty of that is the prior can be a wide range of things.

it can be external data, it can be prior opinions on that. It can be hierarchical structure, but it, and, and within the context, it's based on our current knowledge of data. our current posterior distribution, what's our current uncertainty about the parameters of interest?

Kert Viele

Alright, um, can you give, so I'll, I'll turn this one over to Melanie. We, we've often talked about this, this comes up in a lot of regulatory documents and various other things as the use of informative priors. Somehow I want to say, Hey, um, I, I already know something about what the parameter is like. And we'll certainly get to that as we go, but it's also a lot broader. And Melanie, can you give us some examples of places you would see Bayesian analysis in a clinical trial?

In addition to just borrowing historical or external data?

Melanie Quintana

Yeah. I would say actually most of the trials where I've done a Bayesian

Kert Viele

I.

Melanie Quintana

instance, as like the primary analysis or analysis, Bayesian analysis within the trial itself, most of them actually have. Non informative or vaguely informative prior. So I actually rarely do it in the space of this. I have this really informative prior and I wanna use it. I think it works great in the situation of, uh, we have other evidence that we wanna synthesize.

Within within the trial itself, we're slightly adjacent to the trial and we wanna use that evidence to sort of come up with an overall, uh, synergy of information that we can then use to estimate our current parameter. So. I think there's lots of examples. For instance, you know, borrowing information across concurrent and non concurrent controls in a platform trial or something like that. That's not using an informative prior, that's borrowing information across multiple sources.

Kert Viele

So with respect to that, um, we've talked about the modeling aspects of Bayesian. Uh, we also use Bayesian a ton in adaptive trials. Um, Scott, could you talk about why we might use it in adaptive trials? Why, why is it a natural fit there?

Scott Berry

Yeah, they, as I try, I tried poorly to describe Bayesian. One of the nice aspects of it is you, you start with a distribution of the parameters. You observe some data and that's updated based on your current information. And by the way, that could be, um, uh, auxiliary markers, early clinical markers, a 30 day outcome where 90 days is primary.

And now you, you get an updated of the parameters of interest, and if you collect a little bit more data, it's updated again, and you get the same answer if you update five times or if you just did it all in one fell swoop. it's this beautiful mechanism based on the current level of data that captures the appropriate amount of uncertainty. So if I'm gonna make an adaptation in a trial, going to select a dose in a seamless trial, I'm gonna make a decision on enrichment.

Do we want to drop a population or not? Based on all the data I've collected in the trial, what is my uncertainty about these parameters, about the effect in this population, about this dose, the likelihood of success in the trial? The Bayesian approach is such a natural and beautiful way to do that. Part of it is also the real awkwardness of using frequent to statistics in that paradigm where analyses are based on the sample space.

And in adaptive trials, that gets really, really complicated very, very quickly. And in the Bayesian approach, it's a very natural thing 'cause you only have to analyze the data you've seen. And not concerned about data you haven't seen, which does matter in a frequent analysis. So it's a very, very natural way to continually update the distribution and then drive adaptive decisions, even if at the end of the day trials analyze.

Using a P value, you can design better, smarter trials by using Bayesian throughout the adaptation process.

Kert Viele

So you, you talked about, let me kinda harm out on, on the last word that you'd said there, which was a better trial. Um, I've often heard. This notion that if you're using Bayesian it's and really adaptive in general, that it's a shortcut. The goal is to do something smaller, to try to make decisions on less information. If I use an informative prior, I need less data. In my current trial, I'm trying to make the sample size smaller.

A lot of times it's talked about less information that you're trying to, usually this is referred to as lowering the bar. Um, so, you know, are bayesians lowering the bar or is there, is there more to it than that?

Scott Berry

Yeah, it's uh, uh, absolutely not. Uh, that now in some circumstances there's a Bayesian analysis that's walking in that could have aspects of lowering the bar. The it, depending on what that means, it could be the success criteria is easier than a traditional 5%. Two-sided type 1 error. It it, uh, in a scenario, it could end up being a smaller sample sizes, but many times by employing these methods, we're actually collecting more data.

In this scenario, we're analyzing more, uh, uh, outcomes combined together. We're borrowing from a patient population. In that scenario, we're, we may be utilizing more data drive the answers.

If you're If you're, if you're running a trial where you're estimating the effect in pediatrics and you're borrowing from adults, you're using more data to provide a better answer of pediatrics So there's many circumstances, both in Bayesian and in Adaptive where we actually go bigger and we collect more data. We have bigger phase 2 parts in the phase 3 trials. So I think it's actually in many ways kind of the opposite of that, But yet I think we're labeled as that.

Melanie Quintana

Yeah. I mean, I think that's right. I think we're. In Bayesian settings, we're trying to efficiently use all of the information in front of us many times, and because we're sometimes bringing in more information that otherwise you might have ignored In some senses, we might be raising the bar, like Scott talked about multiple endpoints. We might have a model where we're looking at. What's the common treatment effect across multiple endpoints now?

And actually then Now we might have to raise the bar a little bit. We might have to show that each of these endpoints are all significant to actually be positive. So in some senses, certainly I think we could possibly be raising the bar because we're bringing in more data.

Scott Berry

So, so Melanie, you're involved in the Heal a LS platform trial, which you can go back to a previous podcast with, uh, Amer Kovich and, and go into that. But you have a Bayesian analysis at the end of that trial and. Why Bayesian in that trial and it, it combines sort of multiple things together, hopefully for a better answer.

Melanie Quintana

Yeah. Yeah. So that's a case where. We want to be able to, in a platform trial share controls across multiple treatments that are being tested. So each treatment might have its match controls and we're sharing controls across them. The Bayesian setting lets us kind of borrow information across these different sets of controls, but not pool the information. If the controls are looking very different, we might share more across and borrow more information If they're, or sorry, less information.

If they're looking very similar, we might borrow more information. So the Bayesian model really lets us get at that like dynamic borrowing of the shared controls. It's really this thought that just because something. Might be slightly different. We don't need to throw away the data because it might be a little bit different. We can model those differences and build in and use all of the data to get our answers.

So that's the real, one of the reasons we're using a Bayesian model in a, in the ALS platform trial. And I think often why we use Bayesian models in platform trials and ALS in particular. You know, there's this unique situation actually in multiple neurodegenerative diseases now. We're seeing fatal neurodegenerative diseases. We're seeing these models that are joint models of functional outcome and death time to death, and so we wanna be able to capture what's treatment effect.

Across both of these endpoints get an integrated assessment of how the treatment is affecting both function and time to death. And again, the Bayesian framework is well suited to get these sort of integrated assessments across multiple endpoints. So that's another reason why we're using the Bayesian model and why we might use it even in a non-platform trial in ALS to do this joint modeling of multiple outcomes.

Kert Viele

So related to that, um, could you have been a frequentist and accomplished this? Same goals. I'm, I'm, I'm going through my hits of, uh, I'm going through my hits here.

Melanie Quintana

sure, sure. Uh, no, certainly. I mean, I think you could, would it have been as. Easy to accomplish those goals. I think you could build to share the controls across multiple, what we call regimens in a platform trial. You could build sort of a frequentist meta model that might be able to do that. I think it gets a bit more difficult in the Bayesian setting. It's just very natural to build these hierarchical models that can. Really effortlessly borrow across multiple sources.

So yes, I think you could do it. It would've been, at least for me, a little bit less natural to build that model. The same goes, there's certainly frequentist models, joint models that model both function and time to death. it can be a a little bit less natural, at least for me to build those models. To get them to do the exact thing that we want them to do. In particular, to have this integrated assessment across all of the endpoints.

So there's small features I think that are the Bayesian model might, Bayesian framework might be a little bit better suited for, or at least a little bit more natural to build the model in that framework. But sure, you could do something similar in a frequentist setting, I think.

Kert Viele

So I, I, I'm being picky a little bit. Yeah.

Melanie Quintana

I could, someone could.

Kert Viele

I'm being picky. But you know, part of the idea here is that Bayesians are naturally trained on this idea of collect data, evaluate, um, collect more data, evaluate, collect more data, evaluate, which is essentially the adaptive trial formulation. It's actually the drug development formulation. We just put them in separate trials. So this is a very natural setting. Um, I think there are situations where there are no frequentist, uh, analogs, um, notions like predictive probabilities.

So the idea of predicting the next trial or just the completion of the current trial, you, you have to take into account the uncertainty in the actual, you know, what is the treatment effect and conditional power. It's. Close, but conditional power has to make an assumption on what is the treatment effect and project forward.

Whereas, you know, the Bayesian ideas, all these things are unknown and they're all being used, uh, you know, in a synthesized, coherent way, which I think is very, very natural in this setting.

Scott Berry

Yeah, I mean, in some ways Bayesian is easier.

Kert Viele

Yeah.

Scott Berry

I, conditional power works If you have enough data to estimate the effect, well, but you have to be smart enough to know what is that sample size when we can use it sort of thing. A predictive probability just works, you know, based on the distribution. You update it, you can calculate what's the predictive probability with the current sample size will be successful with a larger sample size, it incorporates uncertainty.

In the right way that you, you, you can be really comfortable that that's gonna give you the right answer. where conditional probably sometimes works, but sometimes it gives you really bad answers because it, it doesn't provide uncertainty at the current place you're sitting at.

Kert Viele

At one point in the, well, we'll call 'em the old, old days. We took a Bayesian design and were asked to make it frequentist, and we went back through and converted. All of the posterior probability thresholds to P values and essentially replicated the design. But one of the fundamental issues is we would've never found that design or naturally came to it without looking at it in a Bayesian framework.

So it was, we could translate it, but we wouldn't naturally think of it from the, from first principles.

Scott Berry

Yep. Yep.

Kert Viele

Uh, speaking of regulators and old times and new times, what are, what, where is the regulatory picture for Bayes Where's it been and where is it going?

Scott Berry

Yeah. I, I, it, it's, where has it been and where is it's going? We're we're coming out of, uh, you,

Kert Viele

I.

Scott Berry

said the olden days. Berry Consultants has around for 25 years. I've Been doing this 25 years, Don has been doing this much longer than that. Oh, you know, 25 years ago it was very rare to see Bayes especially in an FDA trial. in the scenario. I think the first FDA approval at CDR was. like 2008-2010 something like that Uh, Very little mention in guidance documents. No mention in ICH guidance documents. Now we're at a situation where CDRH has a guidance document out.

Uh, we have guidance documents out from USFDA We're supposed to be getting one from the EMA, I think within a month, a guidance document on Bayes. The draft guidance that just came out on ICH E20 mentions Bayesian designs. They're being used in confirmatory trials. They're being used a great deal in learning trials outside of the FDA. They're being used in comparative effectiveness. They're being used in NIH trials. It's being used. a great deal.

Uh, being accepted by FDA for, uh, and, and EMA and is part of the guidances for adequate and well controlled trials.

Melanie Quintana

Yeah, and

Kert Viele

So.

Melanie Quintana

too, the whole complex innovative design program at the FDA, many of those trials that were designed were used baying in some way. You know, many of them borrowed from external data. So I think that really helped lot with the getting more familiar. Um, designs in front of the FDA, knowing, you know, what sort of simulations we might need to show them to get them comfortable with the analysis and those types of designs. So I think that really helped move things forward as well.

Scott Berry

So an interesting question, Kurt, might be. What use is there A frequentist statistics in clinical trials, and I say that only from the sort of perspective that I, I do think in, in almost all of science, the perfect scenario for a P value and maybe the only scenario left in science where people think it's relevant is a phase three clinical trial. And in part it's because it's so prospectively defined. You know, in every other scientific field there's p hacking going on.

There's sort of abusing P values or misrepresenting them and, and Bayesian is making Hughes inroad in all of that in clinical trials that still. Uh, uh, if somebody came to me and wanted to run a fixed trial of a pretty standard endpoint phase three trial, it's one of two adequate and well controlled trials, I tell 'em not to do base. You know, you're, if you're not, if there's no reason for that, if you're not bringing in the extra information, you're fighting an uphill battle.

within that, I mean, that's sort of place that. You, you know, in that scenario. Now, if you're talking about a rare disease, if we're talking about disease progression models, a LS modeling multiple inputs, you know, you get out of that mold of where. Frequentist hypothesis testing. It's really the last part left in clinical trials of that.

And as you move off of that to learning trials, to adaptive trials, to comparative effectiveness trials, you know, all of this, you, it kind of loses, any kind of benefits and, and Bayesian has a good bit of value to all of those scenarios.

Kert Viele

So you got a little too close to my pet peeve, Scott. So I'm gonna mention it. Um, the, uh, so there, there's a kind of a closet industry right now where I run, uh. A regular frequentist trial, you know, I, I want p less than 0.025 and I get P equal 0.0 4.07 one-sided, so it's not significant. And then what I do is the following. I go and write a paper and I look at priors and I come back and go, okay, now the prob posterior probability of superiority is 93, 94, 90 5%, and now I want approval.

The Bayesian design, it's often presented as, oh, I've, I've now. Added something that has made this approvable, whereas the frequentist design didn't bring it out. So I, I know that I, I, I have two strong opinions. I'm gonna let you guys take a shot at it. So is this a good thing for the world, a bad thing for the world? I.

Scott Berry

Uh, mixed. Uh, we, we being bay, and it's not uncommon that somebody runs a failed trial. And, ooh, let's call the bayesians. You know, maybe they'll give us a different answer. Uh, in that scenario, I think you're largely describing this scenario where, where we would probably be on the side of regulators that this is not approvable, uh, in that scenario. Now, there are, there are surely some where what, what I, what bothers me is a trial as. S uh, black and white success or failure, that's it.

What would be really interesting for your scenario okay, suppose it's not approvable. What does my next trial look like? Do I need a whole new trial of the same, a bigger sample size to get below? could I prospectively use that in a new trial? But, but I agree with you. This sort of last grab of cherry picked information to recreate a prior recreate and show success think is bad science.

Kert Viele

So, and you, you bring out, you know, related to this discussion of lowering the bar earlier, you know, we talked about this trial, we wouldn't be saying the trial's good enough in and of itself, but we'd be. Saying that potentially you could combine the information that you currently have with new prospective information, and the totality of the evidence may reach or exceed the bar that you want in the first place.

So the goal is to essentially use the Bayesian methodology to reach the high bar, just not with one trial, as the case may be.

Scott Berry

Yep.

Kert Viele

So, Melanie, do you have examples where we've done this?

Melanie Quintana

Ooh, putting, put together the totality of the evidence

Kert Viele

Yep.

Melanie Quintana

prospectively or retrospectively?

Kert Viele

Both. Whichever, whichever comes to mind.

Melanie Quintana

That's a, that's a good question. Oh, I think Scott has a good example of an FDA approval. Yeah.

Scott Berry

give Melanie time to, to think of other scenarios. But yeah, we have had scenarios in really exactly in this case where, uh. Rebi OTA an FDA approved for the treatment of a rare disease, uh, c diff C difficile infection, c diff infection, and the primary at the end of the phase three trial was prospectively to combine together phase two and phase three.

Um, it, it's really interesting you go to the advisory committee meeting on the discussion of this, but a bayesian analysis combined together both of those ended up jumping a 99% probability hurdle, combining both of those together. Yes, it was a rare disease. There are particular circumstances about the inability to enroll these patients, uh, in this scenario. So there was a need. Two, do something better the scenario. If you go to the FDA label for Rebi ota, it's a faring product.

are only posterior probabilities. There are no P values in the label. We have some, we have some device examples where this has been done. We're actually working on some. Additionally, you can imagine the scenario being a regular, suppose you're a regulator somebody comes to you with a trial design. It's borderline and you actually probably debate long and hard amongst the people at, at the regulators, it's just not there. close, it's just not there.

Do you tell the sponsor it's as though you're at times zero row that you have no credit for this, even though we think it's close and you the treatment works, but we can't approve it yet or. Should the next trial be different? Should it include the information? Should, should this be incorporated? I mean, I think it has to be incorporated. So those types of scenarios are not uncommon where you're trying to utilize all of the information to make better answers.

Melanie Quintana

Yeah, and I think Scott's kind of talking about the end goal and the, the best, you know, the best examples to show that Bayesian can help us get across the finish line for approval. But if you shift more to even like early stage drug development, Bayesian models can really help us if you should carry a product forward or not. So there's many examples where we'll take.

Maybe in a rare disease with multiple endpoints, we'll synthesize sort of all of the available information and get a good sense of does this treatment actually work or not? We'll show that to the company. It helps them make a, a phase one, two decision, or two, three decision. Oftentimes, you know, if the company is needing investments, we'll do those analysis so that investors can get a sense of the totality of the evidence.

There's a great need for using Bayesian in the early phase development too, to really synthesize all of the available information and make a go no go decision or the information to investors. I would say I.

Scott Berry

So you act as though you, you have one pet peeve, Kurt. Do you only have one pet

Kert Viele

I only have one pet peeve for this, for this podcast. I try to get one out every podcast. I'm saving all the rest. So,

Scott Berry

One per podcast. Yep. can I, can I throw out a, a really cool application of, of bays? Uh, uh, so I, I, uh, maybe I'll save that example, uh, for, for a different, a whole podcast

Kert Viele

uh, so you have one good example, perk podcast.

Scott Berry

Yeah. Yeah. That's all I, that's all I can do. Every time I think of a good idea, I do a podcast. So I have one, one per per podcast. I think the world is going to where we have a much better understanding of disease. it's not that there's one big disease, uh, in the scenario. And so we're gonna be running more and more trials where. There are subgroups of disease that we run a trial, and there are five subgroups of disease that we recognize are slightly different, but they're related.

Uh, you know, it used to be 10 years ago, we would've run that trial with all five groups in one trial, and maybe the treatment failed because of heterogeneity over the treatment thing that we just didn't understand the disease well enough in that we used to enroll Alzheimer's trials with people that didn't have Alzheimer's. We didn't understand the disease well enough in them. So now if I'm running a trial with those five groups. Do I do five separate analyses?

It's almost within the Frequentist framework. I have two choices. I do independent analyses of the five, I pool them all. But a Bayesian analysis of that where you're estimating the effect in group A based on the results in all five groups is just better answers. And this is, this dimensionality of disease is going to be a huge problem for frequent to statistics.

It's a very natural thing in bays, and it's a huge problem for us as scientists, but I think it's an area that bays shines and, and as this goes forward, this, and this, by the way, is completely not lowering the bar. And it's a case where it prevents the, Ooh, we didn't work in four of 'em, but we look kind of good in the fifth. Bays largely would say that's probably doesn't work at all by modeling all of them. And so it it, it's not lowering the bar at all. It's actually better answers.

Kert Viele

Okay, so I have a second pet peeve for today. The, um, I, I do. So anyway, the, um, so occasionally this, this idea has, we get pushback on this. The idea of we don't wanna borrow, there's often a prior involved. We don't know what the strength of it is. Um, we get questions such as. Um, if you're going to ask five questions, you know, you have five subgroups. Okay, well, now is there a multiplicity involved?

You know, it really, you could really get down into the weeds of this, where, as you said, these are the kind of mistakes we were making all the time before. If we approved a drug for all five groups in a pooled analysis, presumably it doesn't work for everybody in that trial. We just didn't look. Um, so I haven't even hit my pet peeve yet. Uh, but anyway, you know, but one of my pet peeves though, is a lot of times this kind of analysis got done after the trial. So it was done post hoc.

I'm gonna look at subgroups and it's not really, it's not pre-specified. There's not a lot of standards to it, and I always found it frustrating where. To propose it as a pre-specified design and say, Hey, I'm trying to control the error rates. I'm trying to make good decisions that there's resistance, but then I can do whatever I want on the back end. It led me on occasion to tell clients, you're better off proposing the pooled analysis and all this stuff just doing as exploratory later, which.

It kills my soul in terms of, and I, I think we're much better off now. I think there's been leaps and bounds, uh, the FDA has a great use case on their website in doing this. Uh, but anyway, I think this, I think you're exactly right. The more we have subgroups. Let me ask you a follow up on that. Related to hierarchical modeling and everything related. Uh, Aaron Judge. Uh, we talked about his batting average in May at 400.

We said we, uh, were using prior information and he was the highest of a group of a number of players. What's his batting average now?

Scott Berry

You know, I don't know the answer to that. I should have prepared for this, but I will guess three 40.

Kert Viele

It's a little higher,

Scott Berry

Okay.

Kert Viele

so I haven't looked for a couple weeks, but it was 360 something last time I looked so.

Scott Berry

Yep. So he is regressing to the mean.

Kert Viele

He is regressing to the mean. We're not quite sure where his mean is. I think, uh, I think Nick said somewhere around three 30 he was expecting,

Scott Berry

Okay,

Kert Viele

so we'll see.

Scott Berry

so disease progression modeling. Melanie, you've done a lot of rare diseases and utilize Bayesian progression modeling.

Melanie Quintana

Yeah, talking about pet peeves, you guys were making me think of mine. My, my pet peeve is, you know, Scott, you said you're stuck then to choose. Are you going to pull or are you going to just test within the individual? I think a lot of times in progressive disease. The choice then if you pull, you have no power because it's heterogeneous and some of the people have totally progressed on the endpoint you're looking at. And so it's hopeless.

So what people do is they enroll this very narrow subset of the population that they think is homogeneous and fastly progressing, but not necessarily the. range of the population that the treatment might work in, and they're making rare diseases even more rare by only enrolling in a small subset of the population. So yeah, disease progression models is one thing that we do a lot in these rare diseases.

I think one of my favorite use cases to date of analysis is within a disease called GNE Myopathy. So this is a disease that is slowly. A progressive muscle wasting disorder kind of starts in your lower limbs and works its way up and out of the, the body. Um, I think the investigators at the NIH came to us and one of the endpoints was the six minute walk test, if I remember correctly, Scott, I think it was.

And, and there are many people who are so advanced in the disease that can't even walk anymore, so it's just. That endpoint is completely hopeless. so we, and this was, don't know, I wanna say one of my first projects at Barry, so now, maybe like 12 years ago, um, worked with them to develop a disease progression model, looking at muscle strength across multiple endpoints. Um, the primary analysis is going to look at the overall slowing in disease progression across multiple endpoints.

So if it's somebody who's non-ambulatory, it might look. More and be more informed by the muscle strength on their upper. Limbs, uh, if it's somebody who's just starting to progress, it might be informed more by the lower limbs. So it really kind of does exactly what we would want it to do and that it, the treatment effect is informed by where you are in the disease. Um, so yeah, that's one of my favorite uses, I think of a Bayesian model. that trial, even though it was designed.

I wanna say almost 12 years ago going to read out. We're gonna hear about this trial, so we'll have a podcast on it. I think probably the end of this year we're actually running that model, the trial ran. and, and that's super exciting. So it's a great use case of using all of the information that you have as efficiently as possible. We use all of the endpoints so we can enroll a broad population and, uh, hopefully a good. Use case for Bayesian.

Hopefully the treatment works, or at least we get a definitive answer of if it does or doesn't work.

Scott Berry

Foley Bayesian primary uh,

Melanie Quintana

Yep.

Scott Berry

uh, uh, based on, uh, disease progression model. I,

Melanie Quintana

Yep.

Scott Berry

think that. Where I talked about subgroups, many, many subgroups, were learning much more about the heterogeneity of diseases. We're also going to be stuck with much more, um, uh, much better endpoints. And you know, think about wearables in a scenario. Think about the complexity of the endpoints. I think we use a lot of very, very dull instruments in clinical trials to identify whether treatments have an effect. Uh, and.

We have a great deal of ability to use endpoints simultaneously for understanding effect. know, there, there, imagine a trial where a single endpoint shows in effect and the other ones secondaries don't. Now you're sort of stuck with, well, the totality of evidence, what it means. But maybe in the integrated analysis or combining together multiple endpoints, much like your trial does, is. Gonna be hugely more valuable in incorporating, you know, the totality of evidence.

Kert Viele

And by the way, Aaron Judge 3 49.

Scott Berry

3 49. Yep. Regressing as we speak.

Melanie Quintana

All right, Kurt, I'm gonna turn it on you. What's your favorite?

Kert Viele

Oh no.

Melanie Quintana

Bay use case in a, in a clinical trial.

Kert Viele

My favorite bays use case in a clinical trial. Ooh. Uh, so I'm certainly, I do borrowing. Um, so that's definitely all of my use cases refer to borrowing. Uh, we've done. Uh, actually kind of a regret, uh, a trial that never actually ran. We had a wonderful experience designing an antibiotic trial, which, uh, talked about external evidence and also talked about borrowing. Uh, between there, there you can have an infection at different sites in the body.

So you could have a UTI, you can have a, a lung infection, an abdominal infection, a skin infection. And we talked about borrowing amongst those and it had some interesting aspects because. A lot of antibiotics. If they don't work in a specific part of the body, it's probably the lung, uh, because that's one of the hardest places to get to. So we were talking about ways to actually let the lungs split apart from the, that, in the modeling. Uh, but that trial, we had great interactions with.

FDA, it was part of a grant that actually involved FDA review, uh, but it did not get off the ground. As it turned out. It had funding issues after, uh, uh, some changes in funder priorities. So, but that would've been my favorite.

Scott Berry

What about, what about the ROAR trial? I would've guessed the ROAR trial.

Kert Viele

So Rohr is, roar is a fascinating story. So Roar is a. It's a basket trial, meaning they looked at a drug in multiple rare cancers. Um, and it had borrowing across the subgroups. Um, certainly that was, I would call that my most successful Bayesian trial. Um, certainly multiple approvals. Uh, this was the first drug that got what's called a pan. Uh, approval. So it's approved for any cancer that has a particular biomarker.

So at some level it's a, it's a pass setter in that, um, the interesting thing about that trial is the, the drug is, it's one of those trials where the drug is so awesome that any analysis would've gotten the same answer. So, so there is, there is that aspect to it where I can't claim that the Bayesian put it over the top, so to speak.

Scott Berry

Yep. Yep.

Kert Viele

I think we're running into

Melanie Quintana

would've the same answer. I have another question.

Kert Viele

Uhhuh,

Melanie Quintana

How do you feel about mixing Bayesian infrequent analysis, Scott and.

Kert Viele

so can you give an example of what would be mixing.

Scott Berry

You mean at the end of the trial that some of them are in IC, so,

Melanie Quintana

Yep. Yep.

Scott Berry

but what's clear is we need to make Melanie the host next time.

Kert Viele

Yeah,

Scott Berry

she asks better, better questions. Kurt.

Kert Viele

sorry.

Scott Berry

So, uh, hey, part of this is a, probably a reaction. The New England Journal of Medicine has multiple times to us come back and said, if the primary analysis is Bayesian, everything is Bayesian. And I, I don't care if you set it up in this app to do it one way, we're gonna make the whole thing Bayesian. So we used to do some of them. Bayesian, but not all of them. Bayesian.

Now, in circumstances where this could potentially be there, we've, we've created the entire trial from a Bayesian approach, so I, I, I like it. I like that if you're gonna do a Bayesian, let's do it all. Bayesian. In that circumstance, there are certainly scenarios where mixing them and providing both. Have benefit to understanding what's going on. So I don't take a high road that you know that two of them can't exist within a similar report. That there's not value in both.

Kert Viele

So I don't, I don't know what I, I certainly, I agree with you. I like that they all Bayesian. If you can do it, I don't know that this is solving, you know, to forbid the mixing, I don't know that it's solving a problem. You certainly want to pre-specify. I don't want to do, Hey, I'm gonna do the Bay, I'm gonna do the frequentist and I'll report whichever is higher. That's not, but you end up in a case where. Different people are doing the primary as opposed to all the safety analyses.

They have different expertise. I don't know that, anyway, adding a ton of extra work for what feels like an aesthetic choice anyway. I'm not gonna, I, it, it feels unnecessary to me to worry about it.

Melanie Quintana

Yeah, I mean, I, I think it can be really helpful sometimes if you have a complex Bayesian model. To show some more simple traditional frequentist summaries to maybe the complex Bayesian model. Maybe this GNE myopathy model feels really black box and complex and people don't know what's happening. So can I pull apart the pieces and show some simple frequentist summaries that people can say, Hey, okay, maybe the, the Complex Bay model, it has a lot greater precision.

We get a strong posterior probability. Maybe we're seeing directional effects in these frequentist results, but that's making me believe your complex bium model. So I have no problem with, mixing them. I think sometimes it's nice to show that you get at least not completely different results with the the two types of analysis.

Scott Berry

All right, so. We're, we're, we're being Bayesian. in the interim and let's, will pick this up. This conversation will continue. as we talk about Bayesian non Bayesian trials. We bring you examples, but today we were in the interim talking about Bayesian. Kurt, thanks for hosting. Melanie, thanks for joining us and, and taking over the host role for Kurt. That was wonderful.

Melanie Quintana

Thanks.

Scott Berry

And thank you all till the next time we are here in the interim.

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