Microbiome profiling techniques: from immunology to agriculture

In this episode of the Talking Techniques podcast, we explore microbiomes and the techniques used to profile them. Get an overview of the different techniques’ working principles, their pros and cons and the different applications that they are best suited to. Providing an expert insight into this field is Annabelle Damerum, Microbiome R&D Scientist at Zymo Research. Annabelle reveals some key tips best practice when profiling the microbiome and details the importance of an emerging aspect of the field: the vaginal microbiome. Contents: Into: 00:00-01:50Why it is important to profile microbiomes. 01:50-04:15Key applications of microbiome profiling: 04:15-06:10Techniques used to profile the microbiome and their working principles: 06:10-09:20Targeted sequencing: 06:10-08:00Shotgun metagenomics: 08:00-09:00Metatranscriptomics: 09:00-9:15The strengths and limitations of these techniques: 09:12-             Targeted sequencing: 09:20-10.15Shotgun metagenomics: 10:15-11:25Metatranscriptomics: 11:25-11:50Matching techniques with applications: 11:50-13:30Tips for best practice for using these techniques: 13:30-16:25What is one thing you would ask for to improve the ability of microbiome profiling techniques: 16:55-18:10Investigating the vaginal microbiome: 18:10-20:55Conclusions and closing: 20:55-22:10